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In a large mixing bowl, combine the sugar and butter and mix until fluffy. Add the eggs, milk, vanilla and lemon extracts, and mix until smooth. In a separate bowl, sift together the flours, baking powder, and salt, and stir until mixed. Add the dry ingredients to the wet ingredients in batches, stirring well to combine.
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Using a soup spoon, drop spoonfuls of the dough two inches apart on a baking sheet lined with parchment paper. Bake the cookies at 375 degrees until the edges begin to brown, about 20 to 30 minutes. Cool completely.
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For the frosting: Place the powdered sugar in a large bowl. Gradually add enough of the boiling water to the sugar, stirring constantly, until the mixture is thick and spreadable.
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Remove half of the frosting to the top half of a double boiler set over simmering water and add the chocolate. Warm the mixture, stirring, until the chocolate is melted and the frosting is smooth. Remove from the heat. With a brush or spatula, coat half of each cookie with chocolate frosting and the other half with white frosting.